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pub:start [2019/01/28 14:56] – [ILDIS publications] admin@ildis.org | pub:start [2019/01/29 15:10] – admin@ildis.org | ||
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====== ILDIS publications ====== | ====== ILDIS publications ====== | ||
+ | |||
+ | * [[bib:]] | ||
+ | * [[.notes:]] | ||
(under construction) | (under construction) | ||
- | |||
- | Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T. | ||
- | The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea. | ||
- | In: J. Felsenstein, | ||
Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane, | Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane, | ||
The Vicieae Database: an experimental taxonomic monograph. | The Vicieae Database: an experimental taxonomic monograph. | ||
- | In: R. Allkin and F.A. Bisby, eds. | + | In: R. Allkin and F.A. Bisby, 1984, pp. 175-188 |
+ | <wrap lo right> | ||
+ | |||
+ | <WRAP lo rightalign> | ||
+ | // | ||
+ | for the legume tribe Vicieae was assembled and managed | ||
+ | (using the Exir DBMS with several purpose-written import and export utilities) | ||
+ | in order to permit querying and the production of various printed reports. | ||
+ | Data encoding and conversion is discussed.)// | ||
+ | </ | ||
+ | |||
+ | R. Allkin and F.A. Bisby, eds. | ||
//Databases in Systematics//, | //Databases in Systematics//, | ||
- | London, Academic Press, Systematics Association Special Volume **26**, 1984, 175-188 | + | London, Academic Press, Systematics Association Special Volume **26**, 1984. |
- | [book at 1CM] | + | <wrap lo right>[book at 1CM]</ |
Allkin, R. & White, R.J. | Allkin, R. & White, R.J. | ||
Line 19: | Line 29: | ||
// | // | ||
Elsevier (North-Holland), | Elsevier (North-Holland), | ||
- | [book at 8SG] | + | <wrap lo right>[book at 8SG]</ |
+ | |||
+ | <WRAP lo rightalign> | ||
+ | :!: //(Notes to be completed)// | ||
+ | </ | ||
Allkin, R., White, R.J. & Winfield, P.J. | Allkin, R., White, R.J. & Winfield, P.J. | ||
Line 25: | Line 39: | ||
// | // | ||
- | White, R.J., Allkin, R. & Winfield, P.J. | + | Babac M.T. & Bisby, F.A. |
- | Systematic databases: the Baobab design and the Alice system. | + | A Chemotaxonomic Database. |
- | In: Fortuner, | + | In: R. Allkin and F.A. Bisby, 1984, pp. 209-218 |
- | //Advances in Computer Methods for Systematic Biology: Artificial Intelligence, Databases, Computer Vision//, | + | <wrap lo right>[book at 1CM]</ |
- | Johns Hopkins University Press, Baltimore, 1993, 297-311 | + | |
- | [book at 1CM] | + | |
- | Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R. | + | <WRAP lo rightalign> |
- | The ILDIS project on the world' | + | // |
- | In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds. | + | managed by the Exir DBMS, built as part of the Vicieae Database Project |
- | //Designs for a Global Plant Species Information System//, | + | and planned to be a "phase 2" project for ILDIS.)// |
- | The Systematics Association Special Volume No. 48, Clarendon Press, Oxford. | + | </ |
- | [book at 1CM] | + | |
+ | Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T. | ||
+ | The Vicieae Database Project: experimental uses of a monographic taxonomic database for species | ||
+ | In: J. Felsenstein, | ||
+ | |||
+ | Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds., | ||
+ | //Designs for a Global Plant Species Information System//, | ||
+ | Oxford University Press, 1993 | ||
+ | [the title page quotes the Clarendon Press, Oxford, 1993, but the actual publication date was February 1994] | ||
+ | <wrap lo right>[book at 1CM]</ | ||
Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J. | Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J. | ||
// | // | ||
Chapman & Hall, London, 1994, 1580pp | Chapman & Hall, London, 1994, 1580pp | ||
- | [book at 8SG] | + | <wrap lo right>[book at 8SG]</ |
- | White, R.J. & Allkin, R. | + | <WRAP lo rightalign> |
- | A strategy for the evolution of database designs. | + | :!: //(Notes to be completed)// |
- | In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds., | + | </ |
- | //Designs for a Global Plant Species Information System//, | + | |
- | Oxford University Press, 1994, 284-303 | + | |
- | [book at 1CM] | + | |
Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A. | Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A. | ||
Line 57: | Line 75: | ||
Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J. | Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J. | ||
World database of Legumes - results from the first twenty years of the ILDIS project. | World database of Legumes - results from the first twenty years of the ILDIS project. | ||
- | In: // | + | In: // |
- | + | Scientific Program & Abstracts//, | |
- | White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A. | + | |
- | Creating frameworks to support interoperability of biodiversity data. | + | |
- | //Proc. BNCOD21 Bioinformatics Workshop//, | + | |
- | Heriot-Watt University, Edinburgh, 2004, 92-105 | + | |
- | [ISBN 1-904410-12-X] | + | |
- | [book at 8SG] | + | |
Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.) | Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.) | ||
Line 72: | Line 84: | ||
[CD-Rom: | [CD-Rom: | ||
(also available online at https:// | (also available online at https:// | ||
+ | |||
+ | White, R.J., Allkin, R. & Winfield, P.J. | ||
+ | Systematic databases: the Baobab design and the Alice system. | ||
+ | In: Fortuner, R., ed., | ||
+ | //Advances in Computer Methods for Systematic Biology: | ||
+ | Artificial Intelligence, | ||
+ | Johns Hopkins University Press, Baltimore, 1993, 297-311 | ||
+ | <wrap lo right> | ||
+ | |||
+ | <WRAP lo rightalign> | ||
+ | // | ||
+ | (the taxon hierarchy, character variability and dependence, and missing values) | ||
+ | and how these are addressed in the unimplemented " | ||
+ | and in the Alice software suite which was specifically implemented | ||
+ | to handle these issues and provide a complete DBMS | ||
+ | for taxonomists and other biologists working with taxonomically organised data sets.)// | ||
+ | </ | ||
+ | |||
+ | White, R.J. & Allkin, R. | ||
+ | A strategy for the evolution of database designs. | ||
+ | In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 284-303 | ||
+ | |||
+ | <WRAP lo rightalign> | ||
+ | // | ||
+ | including the use of XDF by the Alice software to merge contributed data sets, | ||
+ | rather than relying on a single common data structure for all databases.)// | ||
+ | </ | ||
+ | |||
+ | White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A. | ||
+ | Creating frameworks to support interoperability of biodiversity data. | ||
+ | //Proc. BNCOD21 Bioinformatics Workshop//, | ||
+ | Heriot-Watt University, Edinburgh, 2004, 92-105 | ||
+ | [ISBN 1-904410-12-X] | ||
+ | <wrap lo right> | ||
+ | |||
+ | <WRAP lo rightalign> | ||
+ | :!: //(Notes to be completed)// | ||
+ | </ | ||
White, R.J. | White, R.J. | ||
Linking biodiversity databases: | Linking biodiversity databases: | ||
In: Curry, G.B. & Humphries, C.J., eds., | In: Curry, G.B. & Humphries, C.J., eds., | ||
- | // | + | // |
- | [book at 1CM] | + | CRC Press, Systematics Association Special Volume **73**, 2007, 111-128, ISBN 0-415-33290-7 |
+ | <wrap lo right>[book at 1CM]</ | ||
- | ===== Notes (primarily for the Anne Bruneau legume history MS) ===== | + | <WRAP lo rightalign> |
+ | //(Explains how large collaborative biological databases | ||
+ | (such as the ERMS checklist and the ILDIS World Database of Legumes) | ||
+ | were assembled by // | ||
+ | and contrasts this with // | ||
+ | in initiatives such as the Species 2000 Dynamic Checklist | ||
+ | and its further development in the Spice project. | ||
+ | Databases such as ILDIS and the Species 2000 Catalogue of Life are seen as | ||
+ | taxonomic backbones to which a variety of further data sets can be linked | ||
+ | to expand the range of data available to the user. | ||
+ | The reliability of such " | ||
+ | such as differing taxonomic treatments in the various data sets is discussed, | ||
+ | with a proposed solution using " | ||
+ | which was developed further in the " | ||
+ | </ | ||
- | ==== History ==== | + | Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R. |
+ | The ILDIS project on the world' | ||
+ | In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 131-144 | ||
+ | <wrap lo right> | ||
- | According to Peter Brewer' | + | <WRAP lo rightalign> |
- | ILDIS (Bisby | + | //(Describes the assembly of the ILDIS database from regional contributions |
- | began in 1985 (Zarucchi //et al//., 1993) | + | to make the "Phase 1" checklist with geographical data |
- | and was (at version 5 in 2001) "nearing completion" | + | and a few morphological and plant-use fields, with full citation of references, |
+ | and explains current and planned future activities aiming to use this as a " | ||
+ | to link in "Phase 2" data sets, especially phytochemistry | ||
+ | Emphasises the role of ILDIS in providing services to users, | ||
+ | and interestingly assumes that scientists will send their requests to "enquiry centres", | ||
+ | thus failing to foresee the rapid growth of the Internet and especially the World-Wide Web, | ||
+ | although an experimental online data retrieval was planned.)// | ||
+ | </ | ||
- | ==== Descendants ==== | ||
- | |||
- | ILDIS was was of the first two or three(?) GSDs contributing to the Species 2000 Catalogue of Life. | ||
- | |||
- | Burnett J., IOPI: genesis of GPSIS? | ||
- | In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds., | ||
- | //Designs for a Global Plant Species Information System//, | ||
- | Oxford University Press, 1994, 334-342 | ||
- | (IOPI could be viewed as a step between ILDIS and CoL.) | ||
- | [book at 8SG] | ||
pub/start.txt · Last modified: 2019/01/29 15:11 by admin@ildis.org